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When you manually run the Archive command on a folder,
it reads through the
messages but doesn't actually move any to the archive folder. Similarly,
Auto-archive doesn't move messages either.
Outlook bases it's archival decision on the date of
last modification, not
when the item was received. If a user's mail was recently imported, say,
during an upgrade, or a recent download from a server, then the Last
Modified date is today, not the date of reception of the messages.
Manually move items to an archive folder using
drag + drop. Archive and
auto-archive will "catch up" to the settings eventually.
-or-
Use Tools | Organize to move messages based on Received Date.
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Use Tools | Mailbox Cleanup. |